Jiang Q, Ang JYJ, Lee AY, Cao Q, Li KY, Yip KY, Leung DCY. G9a Plays Distinct Roles in Maintaining DNA Methylation, Retrotransposon Silencing, and Chromatin Looping. Cell Rep. 2020 Oct 27;33(4):108315.

Ho EY*, Cao Q*, Gu M, Chan RW, Wu Q, Gerstein M, Yip KY. Shaping the nebulous enhancer in the era of high-throughput assays and genome editing. Brief Bioinform. 2020 May 21;21(3):836-850 (*co-first author).

Zhang J, Lee D, Dhiman V, Jiang P, Xu J, McGillivray P, Yang H, Liu J, Meyerson W, Clarke D, Gu M, Li S, Lou S, Xu J, Lochovsky L, Ung M, Ma L, Yu S, Cao Q, Harmanci A, Yan KK, Sethi A, Gürsoy G, Schoenberg MR, Rozowsky J, Warrell J, Emani P, Yang YT, Galeev T, Kong X, Liu S, Li X, Krishnan J, Feng Y, Rivera-Mulia JC, Adrian J, Broach JR, Bolt M, Moran J, Fitzgerald D, Dileep V, Liu T, Mei S, Sasaki T, Trevilla-Garcia C, Wang S, Wang Y, Zang C, Wang D, Klein RJ, Snyder M, Gilbert DM, Yip K, Cheng C, Yue F, Liu XS, White KP, Gerstein M. An integrative ENCODE resource for cancer genomics. Nat Commun. 2020 Jul 29;11(1):3696.

Cao Q, Zhang Z, Fu AX, Wu Q, Lee TL, Lo E, Cheng ASL, Cheng C, Leung D, Yip KY. A unified framework for integrative study of heterogeneous gene regulatory mechanisms. Nat Machine Intelligence. 2020; 2(8):447-456.

Cao Q, Anyansi C, Hu X, Xu L, Xiong L, Tang W, Mok MTS, Cheng C, Fan X, Gerstein M, Cheng ASL, Yip KY. Reconstruction of enhancer-target networks in 935 samples of human primary cells, tissues and cell lines. Nat Genet. 2017 Oct;49(10):1428-1436.

Cao Q, Yip KY. (2016). A survey on computational methods for enhancer and enhancer target predictions. Computational biology and bioinformatics: Gene Regulation. 2016: 3-27.

Ho ED, Cao Q, Lee SD, Yip KY. VAS: a convenient web portal for efficient integration of genomic features with millions of genetic variants. BMC Genomics. 2014 Oct 11;15(1):886.